主要研究方向：
1、蛋白質組學新技術新方法-蛋白質高可信度鑒定、定量及翻譯後修飾位點的質譜鑒定
2、腫瘤細胞表面新生抗原大規模鑒定及其在腫瘤發生、發展與轉移中的作用機制
3、基于腫瘤細胞表面新生抗原的特異性抗體、抗體藥物偶聯物及免疫多肽組的制備與體内作用機制
4、神經系統退行性病變相關蛋白與小膠質細胞激活的調控作用機制
5、外泌體臨床檢測新方法、個性化治療關鍵調控蛋白及MRM 靶向質譜定量的臨床多标志物檢測新方法

代表論文：
1. Li MZ, Zhang Q, Shen J et al. (2017) Discovery and identification of serum potential biomarkers for Colorectal Cancer using TMT quantitative proteomics. Int J Cancer Oncol. 4(2): 1- 7.
2. Wang SX, Li ZY, Shen HY et al. (2016) Quantitative Phosphoproteomic Study Reveals that Protein Kinase A Regulates Neural Stem Cell Differentiation Through Phosphorylation of Catenin Beta-1 and Glycogen Synthase Kinase 3β. Stem Cells. 34(8):2090-101.
3. Bao JT, Zheng LJ, Zhang Q et al. (2016) Deacetylation of TFEB promotes fibrillar Aβ degradation by upregulating lysosomal biogenesis in microglia. Protein Cell. 7:417-33.
4. Zhang XF, Ren XQ, Zhang Q et al. (2016) PGC-1α/ERRα-Sirt3 pathway regulates DAergic neuronal death by directly deacetylating SOD2 and ATP synthase β. Antioxid Redox Signal. 24(6):312-28.
5. Ma SP, Zhang XF, Zheng LJ et al. (2016) Peroxiredoxin 6 is a crucial factor in the initial step of mitochondrial clearance and is upstream of the PINK1-Parkin pathway. Antioxid Redox Signal. 24(9):486-501.
6. Ren XQ, Bai X, Zhang XF et al. (2015) Quantitative nuclear proteomics identifies that miR-137-mediated EZH2 reduction regulates resveratrol-induced apoptosis of neuroblastoma cells. Mol. Cell Proteomics. 14: 316-328.
7. Shen HY, An MR, Zou X et al. (2015) Evaluation of the accuracy of protein quantification using isotope TMPP-labeled peptides. Proteomics. 15: 2903-2909.
8. Lv JN, Ma SP, Zhang XF et al. (2014) Quantitative proteomics reveals that PEA15 regulates astroglial Aβ phagocytosis in an Alzheimer`s disease mouse model. J. Proteomics. 110: 45-58.
9. Ma YH, Bao JT, Zhao XY et al. (2013) Activated cyclin-dependent kinase 5 promotes microglial phagocytosis of fibrillar β-amyloid by up-regulating lipoprotein lipase expression. Mol. Cell Proteomics. 12: 2833-2844.
10. Zhao XY, Wang QS, Wang SX et al. (2013) Citric acid-assisted two-step enrichment with TiO2 enhances the separation of multi- and monophosphorylated peptides and increases phosphoprotein profiling. J Proteome Res. 12: 2467-2476.
11. An MR, Zou X, Wang QS et al. (2013) High-confidence de novo peptide sequencing using positive charge derivatization and tandem MS spectra merging. Anal Chem. 85: 4530-4507.
12. Lai W, Wu J, Zou X et al. (2013) Secretome analyses of Aβ (1-42) stimulated hippocampal astrocytes reveal that CXCL10 is involved in astrocyte migration. J Proteome Res. 12: 832-843.
13. Zhao MZ, Wang QS, Lai W et al. (2013) In vitro bioactivity and biocompatibility evaluation of bulk nanostructured titanium in osteoblast-like cells by quantitative proteomic analysis. J. Mater. Chem. B. 1: 1926-1938.
14. He JT, Liu YS, Wang QS et al. (2012) Purification and proteomic analysis of liver membrane skeletons. Methods Mol. Biol. 909: 97-111.
15. Zou X, Zhao MZ, Shen H et al. (2012) MilQuant: a free, generic software tool for isobaric tagging-based quantitation. J. Proteomics. 75: 5516-5522.
16. Zhao MZ, An MR, Wang QS et al. (2012) Quantitative proteomic analysis of human osteoblast-like MG-63 cells in response to bioinert implant material titanium and polyetheretherketone. J. Proteomics. 75: 3560-3573.
17. An MR, Dai JQ, Wang QS et al. Efficient and clean charge derivatization of peptides for analysis by mass spectrometry. (2010) Rapid Commun Mass Spectrom. 24(13):1869-74.
18. Wu J, An Y, Pu H et al. (2010) Enrichment of serum low-molecular-weight proteins using C18 absorbent under urea/dithiothreitol denatured environment. Anal Biochem. 398(1):34-44.
19. Wang QS, He JT, Meng LY et al. (2010) A proteomics analysis of rat liver membrane skeletons: the investigation of actin- and cytokeratin-based protein components. J Proteome Res. 9(1):22-9.
20. Liu YS, He JT, Ji SY et al. (2008) Comparative studies of early liver dysfunction in senescence-accelerated mouse using mitochondrial proteomics approaches. Mol Cell Proteomics. 7(9):1737-47.

發表論文：
1. Niu Z, Shi Q, Zhang W, Shu Y, Yang N, Chen B, Wang Q, Zhao X, Chen J, Cheng N, Feng X, Hua Z, Ji J, Shen P. Caspase-1 cleaves PPARγ for potentiating the pro-tumor action of TAMs. Nat Commun. 2017 Oct 3;8(1):766. doi: 10.1038/s41467-017-00523-6.
2. Guan Z, Cai T, Liu Z, Dou Y, Hu X, Zhang P, Sun X, Li H, Kuang Y, Zhai Q, Ruan H, Li X, Li Z, Zhu Q, Mai J, Wang Q, Lai L, Ji J, Liu H, Xia B, Jiang T, Luo SJ, Wang HW, Xie C. Origin of the Reflectin Gene and Hierarchical Assembly of Its Protein. Curr Biol. 2017 Sep 25;27(18):2833-2842.e6. doi: 10.1016/j.cub.2017.07.061. Epub 2017 Sep 7.
3. Li Y, Wang Z, Zhou W, Zhang K, Ma J, Wu F, Ji J, Hong X, Deng Z, He S, Xu P. A rapid and easy protein N-terminal profiling strategy using (N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and StageTip. Proteomics. 2017 Jul;17(13-14). doi: 10.1002/pmic.201600481. Epub 2017 Jul 3.
4. Li MZ, Zhang Q, Shen J, Tang L, Ji J. Discovery and identification of serum potential biomarkers for Colorectal Cancer using TMT quantitative proteomics. Int J Cancer Oncol. 2017, 4(2): 1-7.
5. Shu Y, Lu Y, Pang X, Zheng W, Huang Y, Li J, Ji J, Zhang C, Shen P. Phosphorylation of PPARγ at Ser84 promotes glycolysis and cell proliferation in hepatocellular carcinoma by targeting PFKFB4. Oncotarget. 2016 Nov 22;7(47):76984-76994. doi: 10.18632/oncotarget.12764.
6. Feng S, Zhao Y, Xu Y, Ning S, Huo W, Hou M, Gao G, Ji J, Guo R, Xu D. Ewing Tumor-associated Antigen 1 Interacts with Replication Protein A to Promote Restart of Stalled Replication Forks. J Biol Chem. 2016 Oct 14;291(42):21956-21962. Epub 2016 Sep 6.
7. Yao Y, Shi Q, Chen B, Wang Q, Li X, Li L, Huang Y, Ji J, Shen P. Identification of Caspase-6 as a New Regulator of Alternatively Activated Macrophages. J Biol Chem. 2016 Aug 12;291(33):17450-66. doi: 10.1074/jbc.M116.717868. Epub 2016 Jun 20.
8. Wang S, Li Z, Shen H, Zhang Z, Yin Y, Wang Q, Zhao X, Ji J. Quantitative Phosphoproteomic Study Reveals that Protein Kinase A Regulates Neural Stem Cell Differentiation Through Phosphorylation of Catenin Beta-1 and Glycogen Synthase Kinase 3β. Stem Cells. 2016 Aug;34(8):2090-101. doi: 10.1002/stem.2387. Epub 2016 May 10.
9. Bao J, Zheng L, Zhang Q, Li X, Zhang X, Li Z, Bai X, Zhang Z, Huo W, Zhao X, Shang S, Wang Q, Zhang C, Ji J. Deacetylation of TFEB promotes fibrillar Aβ degradation by upregulating lysosomal biogenesis in microglia. Protein Cell. 2016 Jun;7(6):417-33. doi: 10.1007/s13238-016-0269-2. Epub 2016 May 21.
10. Wei M, Zhang J, Jia M, Yang C, Pan Y, Li S, Luo Y, Zheng J, Ji J, Chen J, Hu X, Xiong J, Shi Y, Zhang C. α/β-Hydrolase domain-containing 6 (ABHD6) negatively regulates the surface delivery and synaptic function of AMPA receptors. Proc Natl Acad Sci U S A. 2016 May 10;113(19):E2695-704. doi: 10.1073/pnas.1524589113. Epub 2016 Apr 25.
11. Ma S, Zhang X, Zheng L, Li Z, Zhao X, Lai W, Shen H, Lv J, Yang G, Wang Q, Ji J. Peroxiredoxin 6 Is a Crucial Factor in the Initial Step of Mitochondrial Clearance and Is Upstream of the PINK1-Parkin Pathway. Antioxid Redox Signal. 2016 Mar 20;24(9):486-501. doi: 10.1089/ars.2015.6336. Epub 2016 Feb 19.
12. Tang L, Shen H, Li X, Li Z, Liu Z, Xu J, Ma S, Zhao X, Bai X, Li M, Wang Q and Ji J. MiR-125a-5p decreases after long non-coding RNA HOTAIR knockdown to promote cancer cell apoptosis by releasing caspase 2. Cell Death and Disease. 2016, 7, e2137; doi:10.1038/cddis.2016.41
13. Zhao M, Li H, Liu X, Wei J, Ji J, Yang S, Hu Z, Wei S. Response of Human Osteoblast to n-HA/PEEK--Quantitative Proteomic Study of Bio-effects of Nano-Hydroxyapatite Composite. Sci Rep. 2016 Mar 9;6:22832. doi: 10.1038/srep22832.
14. Zhang X, Ren X, Zhang Q, Li Z, Ma S, Bao J, Li Z, Bai X, Zheng L, Zhang Z, Shang S, Zhang C, Wang C, Cao L, Wang Q, Ji J.PGC-1α/ERRα-Sirt3 Pathway Regulates DAergic Neuronal Death by Directly Deacetylating SOD2 and ATP Synthase β. Antioxid Redox Signal. 2016 Feb 20;24(6):312-28. doi: 10.1089/ars.2015.6403. Epub 2015 Nov 19.
15. Shen H, An M, Zou X, Zhao X, Wang Q, Xing G, Ji J. Evaluation of the accuracy of protein quantification using isotope TMPP-labeled peptides. Proteomics. 2015 Sep;15(17):2903-9. doi: 10.1002/pmic.201400495. Epub 2015 Jun 11.
16. Xing M, Yang M, Huo W, Feng F, Wei L, Jiang W, Ning S, Yan Z, Li W, Wang Q, Hou M, Dong C, Guo R, Gao G, Ji J, Zha S, Lan L, Liang H, Xu D. Interactome analysis identifies a new paralogue of XRCC4 in non-homologous end joining DNA repair pathway. Nat Commun. 2015 Feb 11;6:6233. doi: 10.1038/ncomms7233.
17. Ren X, Bai X, Zhang X, Li Z, Tang L, Zhao X, Li Z, Ren Y, Wei S, Wang Q, Liu C, Ji J. Quantitative nuclear proteomics identifies that miR-137-mediated EZH2 reduction regulates resveratrol-induced apoptosis of neuroblastoma cells. Mol Cell Proteomics. 2015 Feb;14(2):316-28. doi: 10.1074/mcp.M114.041905. Epub 2014 Dec 11.
18. Lv J, Ma S, Zhang X, Zheng L, Ma Y, Zhao X, Lai W, Shen H, Wang Q, Ji J. Quantitative proteomics reveals that PEA15 regulates astroglial Aβ phagocytosis in an Alzheimer`s disease mouse model. J Proteomics. 2014 Oct 14;110:45-58. doi: 10.1016/j.jprot.2014.07.028. Epub 2014 Aug 7.
19. Pfanner N, van der Laan M, Amati P, Capaldi RA, Caudy AA, Chacinska A, Darshi M, Deckers M, Hoppins S, Icho T, Jakobs S, Ji J, Kozjak-Pavlovic V, Meisinger C, Odgren PR, Park SK, Rehling P, Reichert AS, Sheikh MS, Taylor SS, Tsuchida N, van der Bliek AM, van der Klei IJ, Weissman JS, Westermann B, Zha J, Neupert W, Nunnari J. Uniform nomenclature for the mitochondrial contact site and cristae organizing system. J Cell Biol. 2014 Mar 31;204(7):1083-6. doi: 10.1083/jcb.201401006.
20. Ma Y, Bao J, Zhao X, Shen H, Lv J, Ma S, Zhang X, Li Z, Wang S, Wang Q, Ji J. Activated cyclin-dependent kinase 5 promotes microglial phagocytosis of fibrillar β-amyloid by up-regulating lipoprotein lipase expression. Mol Cell Proteomics. 2013 Oct;12(10):2833-44. doi: 10.1074/mcp.M112.026864. Epub 2013 Jul 1.
21. Zhao X, Wang Q, Wang S, Zou X, An M, Zhang X, Ji J. Citric acid-assisted two-step enrichment with TiO2 enhances the separation of multi- and monophosphorylated peptides and increases phosphoprotein profiling. J Proteome Res. 2013 Jun 7;12(6):2467-76. doi: 10.1021/pr301061q. Epub 2013 May 21.
22. An M, Zou X, Wang Q, Zhao X, Wu J, Xu LM, Shen HY, Xiao X, He D, Ji J. High-confidence de novo peptide sequencing using positive charge derivatization and tandem MS spectra merging. Anal Chem. 2013 May 7;85(9):4530-7. doi: 10.1021/ac4001699. Epub 2013 Apr 18.
23. Zhao M, Wang Q, Lai W, Zhao X, Shen H, Nie F, Zheng Y, Wei S, Ji J. In vitro bioactivity and biocompatibility evaluation of bulk nanostructured titanium in osteoblast-like cells by quantitative proteomic analysis. J. Mater. Chem B. 2013, 1: 1926-1938.
24. Lai W, Wu J, Zou X, Xie J, Zhang L, Zhao X, Zhao M, Wang Q, Ji J. Secretome analyses of Aβ(1-42) stimulated hippocampal astrocytes reveal that CXCL10 is involved in astrocyte migration. J Proteome Res. 2013 Feb 1;12(2):832-43. doi: 10.1021/pr300895r. Epub 2013 Jan 15.
25. Zou X, Zhao M, Shen H, Zhao X, Tong Y, Wang Q, Wei S, Ji J. MilQuant: a free, generic software tool for isobaric tagging-based quantitation. J Proteomics. 2012 Sep 18;75(17):5516-22. doi: 10.1016/j.jprot.2012.06.028. Epub 2012 Jul 10.
26. Zhao M, An M, Wang Q, Liu X, Lai W, Zhao X, Wei S, Ji J. Quantitative proteomic analysis of human osteoblast-like MG-63 cells in response to bioinert implant material titanium and polyetheretherketone. J Proteomics. 2012 Jun 27;75(12):3560-73. doi: 10.1016/j.jprot.2012.03.033. Epub 2012 Mar 29.
27. Hu J, Sun L, Shen F, Chen Y, Hua Y, Liu Y, Zhang M, Hu Y, Wang Q, Xu W, Sun F, Ji J, Murray JM, Carr AM, Kong D. The intra-S phase checkpoint targets Dna2 to prevent stalled replication forks from reversing. Cell. 2012 Jun 8;149(6):1221-32. doi: 10.1016/j.cell.2012.04.030.
28. He J, Liu Y, Wang Q, Ji J. Purification and proteomic analysis of liver membrane skeletons. Methods Mol Biol. 2012;909:97-111. doi: 10.1007/978-1-61779-959-4_7.
29. Lin X, Wang Q, Cheng Y, Ji J, Yu LC. Changes of protein expression profiles in the amygdala during the process of morphine-induced conditioned place preference in rats. Behav Brain Res. 2011 Aug 1;221(1):197-206. doi: 10.1016/j.bbr.2011.03.002. Epub 2011 Mar 15.
30. Hong J, Huang Y, Li J, Yi F, Zheng J, Huang H, Wei N, Shan Y, An M, Zhang H, Ji J, Zhang P, Xi Z, Du Q, Liang Z. Comprehensive analysis of sequence-specific stability of siRNA. FASEB J. 2010 Dec;24(12):4844-55. doi: 10.1096/fj.09-142398. Epub 2010 Aug 23.
31. Lu X, Shi Y, Lu Q, Ma Y, Luo J, Wang Q, Ji J, Jiang Q, Zhang C. Requirement for lamin B receptor and its regulation by importin {beta} and phosphorylation in nuclear envelope assembly during mitotic exit. J Biol Chem. 2010 Oct 22;285(43):33281-93. doi: 10.1074/jbc.M110.102368. Epub 2010 Jun 24.
32. An M, Dai J, Wang Q, Tong Y, Ji J. Efficient and clean charge derivatization of peptides for analysis by mass spectrometry. Rapid Commun Mass Spectrom. 2010 Jul 15;24(13):1869-74. doi: 10.1002/rcm.4589.
33. Xu Z, Li Q, Wang Y, Song C, Zhang T, Chen L, Ji J, Yang A, Zhu Z, Hu W, Jin B. Production, characterization, and applications of mouse monoclonal antibodies against gonadotropin, somatolactin, and prolactin from common carp (Cyprinus carpio). Gen Comp Endocrinol. 2010 Jul 1;167(3):373-8. doi: 10.1016/j.ygcen.2009.10.005. Epub 2009 Oct 23.
34. Lin X, Wang Q, Ji J, Yu LC. Role of MEK-ERK pathway in morphine-induced conditioned place preference in ventral tegmental area of rats. J Neurosci Res. 2010 May 15;88(7):1595-604. doi: 10.1002/jnr.22326.
35. Wu J, An Y, Pu H, Shan Y, Ren X, An M, Wang Q, Wei S, Ji J. Enrichment of serum low-molecular-weight proteins using C18 absorbent under urea/dithiothreitol denatured environment. Anal Biochem. 2010 Mar 1;398(1):34-44. doi: 10.1016/j.ab.2009.10.047. Epub 2009 Nov 3.
36. Wang Q, He J, Meng L, Liu Y, Pu H, Ji J. proteomics analysis of rat liver membrane skeletons: the investigation of actin- and cytokeratin-based protein components. J Proteome Res. 2010 Jan;9(1):22-9. doi: 10.1021/pr900102n.
37. Wang Q, Zhao X, He S, Liu Y, An M, Ji J. Differential proteomics analysis of specific carbonylated proteins in the temporal cortex of aged rats: the deterioration of antioxidant system. Neurochem Res. 2010 Jan;35(1):13-21. doi: 10.1007/s11064-009-0023-8. Epub 2009 Jun 28.
38. Chen T, Lin X, Xu J, Tan R, Ji J, Shen P. Redox imbalance provokes deactivation of macrophages in sepsis. Proteomics Clin Appl. 2009 Aug;3(8):1000-9. doi: 10.1002/prca.200800016. Epub 2009 Jul 30.
39. Lu Y, Jiao R, Chen X, Zhong J, Ji J, Shen P. Methylene blue-mediated photodynamic therapy induces mitochondria-dependent apoptosis in HeLa cell. J Cell Biochem. 2008 Dec 15;105(6):1451-60. doi: 10.1002/jcb.21965.
40. Chen Y, Zheng W, Li Y, Zhong J, Ji J, Shen P. Apoptosis induced by methylene-blue-mediated photodynamic therapy in melanomas and the involvement of mitochondrial dysfunction revealed by proteomics. Cancer Sci. 2008 Oct;99(10):2019-27. doi: 10.1111/j.1349-7006.2008.00910.x.
41. Liu Y, He J, Ji S, Wang Q, Pu H, Jiang T, Meng L, Yang X, Ji J. Comparative studies of early liver dysfunction in senescence-accelerated mouse using mitochondrial proteomics approaches. Mol Cell Proteomics. 2008 Sep;7(9):1737-47. doi: 10.1074/mcp.M800109-MCP200. Epub 2008 May 29.
42. Wang Q, Liu Y, Zou X, Wang Q, An M, Guan X, He J, Tong Y, Ji J. The hippocampal proteomic analysis of senescence-accelerated mouse: implications of Uchl3 and mitofilin in cognitive disorder and mitochondria dysfunction in SAMP8. Neurochem Res. 2008 Sep;33(9):1776-82. doi: 10.1007/s11064-008-9628-6. Epub 2008 Feb 29.
43. Wei Y, Weng D, Li F, Zou X, Young DO, Ji J, Shen P. Involvement of JNK regulation in oxidative stress-mediated murine liver injury by microcystin-LR. Apoptosis. 2008 Aug;13(8):1031-42. doi: 10.1007/s10495-008-0237-2.
44. Xie X, Li S, Liu S, Lu Y, Shen P, Ji J. Proteomic analysis of mouse islets after multiple low-dose streptozotocin injection. Biochim Biophys Acta. 2008 Feb;1784(2):276-84. Epub 2007 Nov 22.
45. He J, Liu Y, He S, Wang Q, Pu H, Ji J. Proteomic analysis of a membrane skeleton fraction from human liver. J Proteome Res. 2007 Sep;6(9):3509-18. Epub 2007 Aug 4.
46. He J, Liu Y, He S, Wang Q, Pu H, Tong Y, Ji J. Comparison of two-dimensional gel electrophoresis based and shotgun strategies in the study of plasma membrane proteome. Proteomics Clin Appl. 2007 Feb;1(2):231-41. doi: 10.1002/prca.200600004. Epub 2007 Jan 22.
47. Diao WF, Chen WQ, Wu Y, Liu P, Xie XL, Li S, Shen PP, Ji J. Serum, liver, and kidney proteomic analysis for the alloxan-induced type I diabetic mice after insulin gene transfer of naked plasmid through electroporation. Proteomics. 2006 Nov;6(21):5837-45.
48. Hamacher M, Apweiler R, Arnold G, Becker A, Blüggel M, Carrette O, Colvis C, Dunn MJ, Fröhlich T, Fountoulakis M, van Hall A, Herberg F, Ji J, Kretzschmar H, Lewczuk P, Lubec G, Marcus K, Martens L, Palacios Bustamante N, Park YM, Pennington SR, Robben J, Stühler K, Reidegeld KA, Riederer P, Rossier J, Sanchez JC, Schrader M, Stephan C, Tagle D, Thiele H, Wang J, Wiltfang J, Yoo JS, Zhang C, Klose J, Meyer HE. HUPO Brain Proteome Project: summary of the pilot phase and introduction of a comprehensive data reprocessing strategy. Proteomics. 2006 Sep;6(18):4890-8. Erratum in: Proteomics. 2006 Oct;6(20):5674.
49. He S, Wang Q, He J, Pu H, Yang W, Ji J. Proteomic analysis and comparison of the biopsy and autopsy specimen of human brain temporal lobe. Proteomics. 2006 Sep;6(18):4987-96.
50. Yang W, Liu P, Liu Y, Wang Q, Tong Y, Ji J. Proteomic analysis of rat pheochromocytoma PC12 cells. Proteomics. 2006 May;6(10):2982-90.
51. Chen W, Ji J, Ru B. Proteomic analysis of corticobasal degeneration: a case study of corticobasal degeneration at the proteome level. J Neuropsychiatry Clin Neurosci. 2005 Summer;17(3):364-71.
52. Chen T, Wang Q, Cui J, Yang W, Shi Q, Hua Z, Ji J, Shen P. Induction of apoptosis in mouse liver by microcystin-LR: a combined transcriptomic, proteomic, and simulation strategy. Mol Cell Proteomics. 2005 Jul;4(7):958-74. Epub 2005 Apr 28.
53. Chen W, Liu J, Diao W, Tang J, Ji J. Bone loss induced by ovariectomy in rats is prevented by gene transfer of parathyroid hormone or an Arg-Gly-Asp-containing peptide. Biotechnol Lett. 2005 Jan;27(1):41-8.
54. Chen W, Liu J, Diao W, Tang J, Ji J. Transfer of a gene containing the Arg-Gly-Asp peptide prolongs the bleeding time of mice. Biotechnol Lett. 2004 Oct;26(20):1575-80.
55. Liu B, Tang J, Ji J, Gu J. The expression of functional human parathyroid hormone in a gene therapy model for osteoporosis. Cell Tissue Res. 2004 Jul;317(1):57-63. Epub 2004 May 29.
56. Liu B, Tang J, Ji J, Gu J. Prevention of osteoporosis in ovariectomized mice by electroporational gene transfer of parathyroid hormone. Biotechnol Lett. 2003 Dec;25(24):2117-22.
57. Chen W, Ji J, Xu X, He S, Ru B. Proteomic comparison between human young and old brains by two-dimensional gel electrophoresis and identification of proteins. Int J Dev Neurosci. 2003 Jun;21(4):209-16.
58. Zhou B, Yang W, Zhang J, Tong Y, Zhao R, Ji J, Ru B. Comparative Proteome Analysis of Human Brain Occipital Lobes During the Course of Aging. Chemical Journal of Chinese Universities, 2003, 24(12): 2202-2207.
59. Chen W, Ji J, Zhao R, Ru B. Comparative proteome analysis of human temporal cortex lobes by two-dimensional electrophoresis and identification of selected common proteins. Neurochem Res. 2002 Sep;27(9):871-81.
60. Zhao R, Ji J, Yuan H, Guan H, Ru B. Separation of Rabbit Liver Metallothionein Sub-isoforms by RP-HPLC with MALDI-TOF-MS Detection. Chemical Journal of Chinese Universities, 2002, 23(6): 1086-1090.
61. Jian-guo Ji, De-yi Zhang, Yun-hua Ye, Qi-yi Xing. Studies on the reactions of HOBt, HOOBt, HOSu with dichloroalkane solvents. Tetrahedron Letters, Volume 39, Issue 36, 3 September 1998, Pages 6515-6516.

專利：
1. 一種碳-13同位素标記的溴化膦化合物及制備方法和應用, 2014.8.13, 中國, CN201410205986.6
2. 外泌體蛋白CD5L 的檢測方法（申請号：201710940765.7）
3. 一種使用免疫磁珠分離血清中外泌體的方法（申請号：201710935374.6）

主要研究方向：

1、 蛋白質組學新技術新方法-蛋白質高可信度鑒定、定量及翻譯後修飾位點的質譜鑒定

2、 腫瘤細胞表面新生抗原和免疫多肽組的大規模鑒定及其在腫瘤發生、發展與轉移中的作用機制

3、 基于腫瘤細胞表面新生抗原的特異性抗體、抗體藥物偶聯物、免疫多肽組的制備與體内作用機制

4、 神經系統退行性病變相關蛋白與小膠質細胞激活的調控作用機制

主要研究進展：

實驗室主要利用生物質譜技術大規模鑒定與發現重大疾病發生發展相關蛋白及其動态變化，特别關注蛋白質翻譯後修飾（單磷酸化及多磷酸化、乙酰化、甲基化、泛素化、糖基化、組蛋白組合修飾等）對其生物學功能的影響。針對神經系統退行性病變中小膠質細胞激活、Aβ清除與降解、神經元死亡、腫瘤細胞表面新生抗原、免疫細胞和腫瘤微環境相關巨噬細胞表面等發現并鑒定關鍵蛋白及其修飾變化，發現新的關鍵靶标和标志物；結合分子生物學、生物化學、細胞生物學和蛋白質組學技術等多重手段，利用細胞與動物模型和臨床人類标本分析，對腫瘤細胞表面特異蛋白和基因融合蛋白進行體内外功能研究，同時制備特異性抗體、多肽和抗體藥物偶聯物，闡明藥物體内調控機制。此外，我們還開展了蛋白質與抗體藥物等電點、純度、全序列、二硫鍵、糖基化、氧化等修飾的質譜分析研究，建立蛋白藥物相關質量标準。近期主要開展了Cdk5和Sds3調控小膠質細胞激活調控神經系統炎症，以及外泌體臨床檢測新型标志物、結直腸癌和乳腺癌腫瘤細胞表面蛋白新靶标的大規模篩選與功能研究。

實驗室成員：
主要成員：
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