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1. 3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis. Luo X✯, Liu Y✯, Dang D✯, Hu T, Hou Y, Meng X, Zhang F, Li T, Wang C, Li M, Wu H, Shen Q, Hu Y, Zeng X, He X, Yan L, Zhang S*, Li C*, Su B*. Cell. 2021. 184(3):723-740.e21.

2. Establishment of intestinal organoid cultures modeling injury-associated epithelial regeneration. Qu M✯, Xiong L✯, Lyu Y✯, Zhang X, Shen J, Guan J, Chai P, Lin Z, Nie B, Li C*, Xu J*, Deng H*. Cell Res. 2021. 31(3):259-271.

3. Senescence-activated enhancer landscape orchestrates the senescence-associated secretory phenotype in murine fibroblasts. Guan Y✯, Zhang C✯, Lyu G, Huang X, Zhang X, Zhuang T, Jia L, Zhang L, Zhang C*, Li C*, Tao W*. Nucleic Acids Res. 2020. 48(19):10909-10923.

4. tagHi-C Reveals 3D Chromatin Architecture Dynamics during Mouse Hematopoiesis. Zhang C✯, Xu Z✯, Yang S✯, Sun G✯, Jia L, Zheng Z, Gu Q, Tao W*, Cheng T*, Li C*, Cheng H*. Cell Rep. 2020. 32(13):108206.

5. Single-cell transcriptome profiling reveals neutrophil heterogeneity in homeostasis and infection. Xie X✯, Shi Q✯, Wu P, Zhang X, Kambara H, Su J, Yu H, Park SY, Guo R, Ren Q, Zhang S, Xu Y, Silberstein LE, Cheng T, Ma F*, Li C*, Luo HR*. Nat Immunol. 2020. 21(9):1119-1133.

6. Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming. Zhao T✯, Fu Y✯, Zhu J✯, Liu Y✯, Zhang Q✯, Yi Z✯, Chen S, Jiao Z, Xu X, Xu J, Duo S, Bai Y, Tang C, Li C*, Deng H*. Cell Stem Cell. 2018. 23(1):31-45.e7.

7. OCEAN-C: mapping hubs of open chromatin interactions across the genome reveals gene regulatory networks. Li T✯, Jia L✯, Cao Y, Chen Q, Li C*. Genome Biol. 2018. 19(1):54.

8. Cell-Cycle-Targeting MicroRNAs as Therapeutic Tools against Refractory Cancers. Hydbring P, Wang Y, Fassl A, Li X, Matia V, Otto T, Choi YJ, Sweeney KE, Suski JM, Yin H, Bogorad RL, Goel S, Yuzugullu H, Kauffman KJ, Yang J, Jin C, Li Y, Floris D, Swanson R, Ng K, Sicinska E, Anders L, Zhao JJ, Polyak K, Anderson DG, Li C*, Sicinski P*. Cancer Cell. 2017. 31(4):576-590.e8.

9. 3D genome of multiple myeloma reveals spatial genome disorganization associated with copy number variations. Wu P✯, Li T✯, Li R✯, Jia L, Zhu P, Liu Y, Chen Q, Tang D, Yu Y, Li C*. Nat Commun. 2017. 8(1):1937.

10. Dynamic chromatin accessibility modeled by Markov process of randomly-moving molecules in the 3D genome. Wang Y, Fan C, Zheng Y, Li C*. Nucleic Acids Res. 2017. 45(10):e85.